Category: R_Learning
-
Eight R Tidyverse tips for everyday data engineering
www.r-bloggers.com/2022/07/eight-r-tidyverse-tips-for-everyday-data-engineering/
-
Be Awesome in ggplot2: A Practical and Easy Guide for Data Visualization in R
Be Awesome in ggplot2: A Practical Guide to be Highly Effective – R software and data visualization — Read on www.sthda.com/english/wiki/be-awesome-in-ggplot2-a-practical-guide-to-be-highly-effective-r-software-and-data-visualization
-
How to generate a publication-quality sequence logo in genomics studies using R package?
A sequence logo is a graphical representation of the sequence conservation of nucleotides (in a strand of DNA/RNA) or amino acids (in protein sequences). The sequence logo is useful in diverse omics fields, such as chip-seq and m6A-seq. In R, there are too many packages to generate a beautiful sequence logo. Here I introduce ggseqlogo, […]
-
Managing R environments using conda
DataColada have a recent blog about their groundhog package, intended to aid in reproducible science. This is more from a perspective of “I have this… Managing R environments using conda
-
Retrieve RNA-seq and Reads counts from TCGA
The Cancer Genome Atlas (TCGA) is a landmark cancer genomics program that sequenced and molecularly characterized over 11000 cases of primary cancer samples. TCGA provides RNA-seq profiles for these primary cancer samples. I use two R packages for data retrieval, including: TCGA2STAT enables users to easily download TCGA data directly into a format ready for statistical […]